Datasets

• SemanticScience Integrated Ontology

  The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical,...
  • OWL

• Zebrafish anatomy and development

  A structured controlled vocabulary of the anatomy and development of the Zebrafish (Danio rerio).

• Yeast phenotypes

  A structured controlled vocabulary for the phenotypes of budding yeast.

• Experimental Conditions Ontology

  The Experimental Conditions Ontology is designed to represent the conditions under which physiological and morphological measurements are made both in the clinic and in studies...

• Xenopus anatomy and development

  A structured controlled vocabulary of the anatomy and development of the African clawed frog (Xenopus laevis).

• WHO Adverse Reaction Terminology

  WHO Adverse Reaction Terminology, 1997

• C. elegans phenotype

  A structured controlled vocabulary of Caenorhabditis elegans phenotypes

• C. elegans development

  A structured controlled vocabulary of the development of Caenorhabditis elegans.

• C. elegans gross anatomy

  A structured controlled vocabulary of the anatomy of Caenorhabditis elegans.

• Vertebrate Trait Ontology

  The Vertebrate Trait Ontology is a controlled vocabulary for the description of traits (measurable or observable characteristics) pertaining to the morphology, physiology, or...

• Vaccine Ontology

  A biomedical ontology in the vaccine domain

• VIVO

  The VIVO ontology represents researchers in the context of their experience, outputs, interests, accomplishments, and associated institutions.

• vertebrate Homologous Organ Groups

  vHOG is a multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided...

• Vertebrate Anatomy Ontology

  Vertebrate anatomy ontology. Currently covers the skeletal system

• VANDF

  Veterans Health Administration National Drug File

• Units of measurement

  Metrical units for use in conjunction with PATO

• Units Ontology

  A small ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application.

• Uber anatomy ontology

  Uberon is a multi-species anatomy ontology created to facilitate comparison of phenotypes across multiple species, and for GO cross-products. Each uberon class is the superclass...

• Teleost taxonomy

  The Teleost taxonomy ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data...

• TOK_Ontology

  An Ontology describing Resources having different formats. This Ontology can be used to annotate and describe Terminological, Ontological Knowledge resources.

• Plant Trait Ontology

  A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature...

• Traditional Medicine Signs and Symptoms Value Set

  The value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM).

• Translational Medicine Ontology

  This project focuses on the development of a high level patient-centric ontology for the pharmaceutical industry. The ontology should enable silos in discovery research,...

• thesaurus

  thesaurus alternativa

• Mosquito gross anatomy

  A structured controlled vocabulary of the anatomy of mosquitoes.

• Time Event Ontology

  The Time Event Ontology (TEO) is an ontology for representing events, time, and their relationships.

• Terminology for the Description of Dynamics

  The TErminology for the Description of DYnamics (TEDDY) project aims to provide an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of...

• Taxonomic rank vocabulary

  A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO...

• Teleost Anatomy Ontology

  Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa

• Tick gross anatomy

  The anatomy of the Tick, Families: Ixodidae, Argassidae

• Software Ontology

  The Software Ontology (SWO) has the scope of describing types of software used in Bioinformatics. The SWO covers areas such as the software type, the manufacturer of the...

• Syndromic Surveillance Ontology

  The SSO encodes agreement among experts about how Emergency Department (ED) chief complaints are grouped into syndromes of public health importance (consensus definitions).

• Solanaceae Phenotype Ontology

  Solanaceae crop phenotypes and traits, developed in collaboration with the research community, especially for breeder traits of agronomic importance.

• Spider Ontology

  An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (i.g. silk, web, borrow).

• SoyOntology

  Growth, trait and development ontology for soybean

• Sequence types and features

  The Sequence Ontology provides a structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in...

• Suggested Ontology for Pharmacogenomics

  SO-Pharm (Suggested Ontology for Pharmacogenomics) is a domain ontology implemented in OWL-DL, which proposes a formal description of pharmacogenomic knowledge. SO-Pharm...

• SNP-Ontology

  SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of...

• SNOMED Clinical Terms

  SNOMED Clinical Terms

• Situation-Based Access Control

  Context-based healthcare access-control policies

• Student Health Record

  The goal of SHR project is to develop an ontology for the description of student health records. Student health records are created for entering college students in order to...

• Sample processing and separation techniques

  A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis,...

• Sleep Domain Ontology

  An application ontology for the domain of Sleep Medicine

• Smoking Behavior Risk Ontology

  An ontology representing a causal model of smoking behavior risk, including genetic and environmental components. It also includes concepts for describing smoking-related...

• Systems Biology

  The Systems Biology Ontology is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling. The ontology...

• Subcellular Anatomy Ontology (SAO)

  SAO describes structures from the dimensional range encompassing cellular and subcellular structure, supracellular domains, and macromolecules.

• RxNORM

  RxNorm Vocabulary

• Rat Strain Ontology

  This ontology defines the hierarchical display of the different rat strains as derived from the parental strains

• Role Ontology

  The Role Ontology (RoleO) is a ontology in the domain of role classification. RoleO aims to standardize role classification and support computer-assisted reasoning. RoleO is a...

• RNA ontology

  The central aim of the RNA Ontology Consortium (ROC) is to develop an ontology to capture all aspects of RNA - from primary sequence to alignments, secondary and tertiary...